ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11172-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTCGACCAGGGGGTCGAGTG miRNA* CTCGACCCGGGGGTCGAGT mismatches: 3 bulges: 0 |
pre-miRNA
ACTCGACCAGGGGGTCGAGTGGCGTCATCGAGTGGCCTGAGCTGAGGTTACTCGACCTGGGGGTCAAGTAGATGGGAAGATTGGCTCCAAAGTCACTCGA
CCCGGGGGTCGAGT
dot-bracket secondary structure
((((((((...((((((((((((....(((((((((((......)))))))))))....((((((((.............))))))))...)))))))))
)))...))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
ACTCGACCAGGGGGTCGAGTGGCGTCATCGAGTGGCCTGAGCTGAGGTTACTCGACCTGGGGGTCAAGTAGATGGGAAGATTGGCTCCAAAGTCACTCGA
CCCGGGGGTCGAGT
dot-bracket secondary structure
((((((((...((((((((((((....(((((((((((......)))))))))))....((((((((.............))))))))...)))))))))
)))...))))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10602-akr: 3e-60 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10602-akr from PMRD (MNEST047702) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
