ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11177-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACTCGACCCAGGGGTCGAGTA miRNA* CTCGACCCCCTGGTCGAGTATCA mismatches: 3 bulges: 0 |
pre-miRNA
GACATTACTCGACCCAGGGGTCGAGTAATCAATTCGCCACACCACCTGACCACACTCGACCATTCACTCTACCACGTTACTCGACCCCCTGGTCGAGTAT
CATC
dot-bracket secondary structure
.....(((((((((..(((((((((((((..........((.....)).........((....))..........)))))))))))))..))))))))).
....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GACATTACTCGACCCAGGGGTCGAGTAATCAATTCGCCACACCACCTGACCACACTCGACCATTCACTCTACCACGTTACTCGACCCCCTGGTCGAGTAT
CATC
dot-bracket secondary structure
.....(((((((((..(((((((((((((..........((.....)).........((....))..........)))))))))))))..))))))))).
....
SIMILARITIES| miRBase no hits PMRD ath-miRf10282-akr: 2e-54 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10282-akr from PMRD (MNEST047382) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
