ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11180-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTCGACCCCCTGGTCGAG miRNA* CGACCACGAGGTCGAGTGCC mismatches: 2 bulges: 0 |
pre-miRNA
GAGACCACTCGACCCCCTGGTCGAGCAGAGGACATCACCACTTCACTTCACCACTCGACCACGAGGTCGAGTGCCCTC
dot-bracket secondary structure
(((..(((((((((.(.((((((((..((((..............))))....)))))))).).)))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GAGACCACTCGACCCCCTGGTCGAGCAGAGGACATCACCACTTCACTTCACCACTCGACCACGAGGTCGAGTGCCCTC
dot-bracket secondary structure
(((..(((((((((.(.((((((((..((((..............))))....)))))))).).)))))))))..)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10613-akr: 5e-39 microPC no hits | UniProt no hits RFAM MIR854: 0.00006 |
Identical with: ath-miRf10613-akr from PMRD (MNEST047713) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
