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ABOUT THIS RECORD
ID:
MNEST048297
species:
Arabidopsis thaliana
source:
PMRD, original name:
ath-miRf11197-akr
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACTTTTCACTGTTTGATTCGT
miRNA*
GAATCAAACTGTGAAAAGTGA
mismatches:
1
bulges:
0
View larger
pre-miRNA
CAAAATAGTT
ACTTTTCACTGTTTGATTCGT
ACACTTAGATTGTACATCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTATACTAAAAGTGATGTACAATCCAAGTGTAC
GAATCAAACTGTGAAAAGTGA
CTATTTTG
dot-bracket secondary structure
((((((((((
(((((((((.(((((((((((
((((((.((((((((((((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))))))))))))).))))))))
))))))))).)))))))))))
))))))))
SIMILARITIES
miRBase
ath-MIR5014
:
2e-22
PMRD
ath-miRf10692-akr
:
8e-77
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ath-miRf11196-akr
from PMRD (
MNEST048296
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
deep sequencing data evidence