ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11197-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACTTTTCACTGTTTGATTCGT miRNA* GAATCAAACTGTGAAAAGTGA mismatches: 1 bulges: 0 |
pre-miRNA
CAAAATAGTTACTTTTCACTGTTTGATTCGTACACTTAGATTGTACATCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTATACTAAAAGTGATGTACAATCCAAGTGTACGAATCAAACTGTGAAAAGTGACTATTTTG
dot-bracket secondary structure
(((((((((((((((((((.(((((((((((((((((.((((((((((((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))))))))))))).))))))))))))))))).)))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
CAAAATAGTTACTTTTCACTGTTTGATTCGTACACTTAGATTGTACATCACTTTTAGTGTACAAATATATATAAAAATACACAGCGTACACTTTACATTT
GTATACTAAAAGTGATGTACAATCCAAGTGTACGAATCAAACTGTGAAAAGTGACTATTTTG
dot-bracket secondary structure
(((((((((((((((((((.(((((((((((((((((.((((((((((((((((((((((((((((.((........(((.....))).....)).))))
)))))))))))))))))))))))).))))))))))))))))).)))))))))))))))))))
SIMILARITIES| miRBase ath-MIR5014: 2e-22 PMRD ath-miRf10692-akr: 8e-77 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf11196-akr from PMRD (MNEST048296) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
