ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11198-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCTTCGATCGGTTCTGA miRNA* GGAACCGAAGAAGACA mismatches: 0 bulges: 4 |
pre-miRNA
TAAAGATCTGTCTTCTTCGATCGGTTCTGAGTTGTTAAAACTGATTTGGAGATATGATGTGAAATCTGTTGTTGAGTATAACTTACTTAAGATAGAACAA
GCCAATTTCACATCACATCCCCAAATAAGTTTCAACAACTCGGAACCGAAGAAGACAAATCTTTA
dot-bracket secondary structure
(((((((.((((((((....((((((((((((((((.(((((.((((((.(((.((((((((((((((((.(((((((.....)))))))))))))....
.....)))))))))).))).)))))).))))).)))))))))))))))))))))))).)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
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TAAAGATCTGTCTTCTTCGATCGGTTCTGAGTTGTTAAAACTGATTTGGAGATATGATGTGAAATCTGTTGTTGAGTATAACTTACTTAAGATAGAACAA
GCCAATTTCACATCACATCCCCAAATAAGTTTCAACAACTCGGAACCGAAGAAGACAAATCTTTA
dot-bracket secondary structure
(((((((.((((((((....((((((((((((((((.(((((.((((((.(((.((((((((((((((((.(((((((.....)))))))))))))....
.....)))))))))).))).)))))).))))).)))))))))))))))))))))))).)))))))
SIMILARITIES| miRBase no hits PMRD ath-miRf10305-akr: 1e-66 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ath-miRf10305-akr from PMRD (MNEST047405) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
degradome data
download this record
