ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11199-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTGGCACGAGGCCCTTAA miRNA* AATGACGTCGGACCAGGCTT mismatches: 5 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCACGAGGCCCTTAACTTAGATCTATATTTGATTATATATATATGTCTCTTCTTTATTCATTAGTCTATACATGAATGATCATTT
TACGGTTAATGACGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(.((((((.((((.(((((..........))))).)))).....((((((((((.....)).))))))))......
...)))))).).).)))..))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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GGGGAATGTTGTCTGGCACGAGGCCCTTAACTTAGATCTATATTTGATTATATATATATGTCTCTTCTTTATTCATTAGTCTATACATGAATGATCATTT
TACGGTTAATGACGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(.((((((.((((.(((((..........))))).)))).....((((((((((.....)).))))))))......
...)))))).).).)))..))))))..))))))))
SIMILARITIES| miRBase ath-MIR166e: 1e-72 PMRD ath-miR166e: 1e-72 microPC miR166: 0.00000003 | UniProt no hits RFAM mir-166: 2e-71 |
Identical with: ath-MIR166e from miRBase (MNEST040036) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
