ABOUT THIS RECORDspecies: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11200-akr
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTTGAAGAGTGTTGTTGCT miRNA* AAATCCAATACCTTTAGGGAT mismatches: 3 bulges: 3 |
pre-miRNA
GGAAGATAACCTTGAAGAGTGTTGTTGCTCAAGTTAAGCATCTGGAGTTGTCTACAATTACTTATCTCCAAAGGAACTGGACCGGAGAGATTGTTCTCAG
ACAAGTCGAGGAAGCTAAGGTTCTGAAGAAATCCAATACCTTTAGGGATTTCTCC
dot-bracket secondary structure
(((.((...((((((((.((((((...((..((...(((.(((.((.((((((((((((.(((...((((.......))))...))).))))))....))
)))).))..))).)))......))..)).....))))))))))))))...)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGAAGATAACCTTGAAGAGTGTTGTTGCTCAAGTTAAGCATCTGGAGTTGTCTACAATTACTTATCTCCAAAGGAACTGGACCGGAGAGATTGTTCTCAG
ACAAGTCGAGGAAGCTAAGGTTCTGAAGAAATCCAATACCTTTAGGGATTTCTCC
dot-bracket secondary structure
(((.((...((((((((.((((((...((..((...(((.(((.((.((((((((((((.(((...((((.......))))...))).))))))....))
)))).))..))).)))......))..)).....))))))))))))))...)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|C0LGV1|RCH1_ARATH: 9e-23 RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
