ABOUT THIS RECORDspecies: Brachypodium distachyon
source: PMRD, original name: bdi-miR160
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCC miRNA* AGGAGCACTACCGTCCGGGAAAGGGAAGAAGGACGGATGGTAGCTCTGGGGGTGGTGGTAATG mismatches: 7 bulges: 43 |
pre-miRNA
ACGGACCGAATTGCGCATGCCTGGCTCCCTGTATGCCTGCAGGAGGAGCACTACCGTCCGGGAAAGGGAAGAAGGACGGATGGTAGCTCTGGGGGTGGTG
GTAATGGTGGTGTCCGTGTG
dot-bracket secondary structure
((((((...((..(.(((((((.((((((......((....)).(((((((((((((((..............)))))).)))).))))))))))).).)
)).))))..))))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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ACGGACCGAATTGCGCATGCCTGGCTCCCTGTATGCCTGCAGGAGGAGCACTACCGTCCGGGAAAGGGAAGAAGGACGGATGGTAGCTCTGGGGGTGGTG
GTAATGGTGGTGTCCGTGTG
dot-bracket secondary structure
((((((...((..(.(((((((.((((((......((....)).(((((((((((((((..............)))))).)))).))))))))))).).)
)).))))..))))))))...
SIMILARITIES| miRBase far-MIR160: 0.000006 PMRD ttu-miR160b: 0.000000006 microPC miR160: 0.0004 | UniProt sp|Q6K223|ARFH_ORYSJ: 0.00006 RFAM mir-160: 0.0001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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