ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR166
source: PMRD, original name: bdi-miR166
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGACGCCGGGTCTGAAA mismatches: 2 bulges: 0 |
pre-miRNA
GTTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCAT
TCCCCATGACTCGACCATGG
dot-bracket secondary structure
)....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))
))))).))))..))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
GTTTTCATGGTTGTCGAGGGGAATGACGCCGGGTCTGAAAGAAAGAAGGGGGCACGCCGGGAATGACAGCGGTTCCCTAGCTCTTTCGGACCAGGCTTCAT
TCCCCATGACTCGACCATGG
dot-bracket secondary structure
)....(((((((((((.(((((((((.(((.(((((((((((....(((((((.(((.(.......).))))))))))...))))))))))).))).))))
))))).))))..))))))).
SIMILARITIES| miRBase bdi-MIR166a: 8.0E-64 PMRD bdi-miR2509: 5.0E-62 microPC miR166: 6.0E-6 | UniProt no hits RFAM 6mir-166: 1.0E-7 |
Identical with: bdi-MIR166a from miRBase (MNEST041743), bdi-miR2509 from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
