ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR167
source: PMRD, original name: bdi-miR167
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GACTTGTGGTGGCAAGTGCCACA mismatches: 7 bulges: 2 |
pre-miRNA
AGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGC
dot-bracket secondary structure
.(((...(((((..(((((((.((..(((.....)).)..)).)))).)))..))).))...)))......(((..((((....)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
AGAGAAAGCGTGAAGCTGCCAGCATGATCTATCTGACTTGTGGTGGCAAGTGCCACAGCAAATTCAGCAACGCCGTGGCTTCGGGGCCGGC
dot-bracket secondary structure
.(((...(((((..(((((((.((..(((.....)).)..)).)))).)))..))).))...)))......(((..((((....)))))))
SIMILARITIES| miRBase bdi-MIR167a: 1e-46 PMRD osa-miR167b: 0.00000000007 microPC miR167: 0.00007 | UniProt no hits RFAM MIR167_1: 0.000000001 |
Identical with: bdi-MIR167a from miRBase (MNEST041749) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
