ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR169
source: PMRD, original name: bdi-miR169a
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAGGTTGTCCTTGGCTACA mismatches: 4 bulges: 0 |
pre-miRNA
GCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGACTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCCGGCAGGTTGTCCTTGGC
TACACCTAGTTCTCTTCTTCT
dot-bracket secondary structure
(.((((((.(((.((.(((((((((..((((((((.(((((......))))).......((((....))))...........))))))))..))))))))
).)))))..)))))).)....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
GCAGAGAAGGGGATGCAGCCAAGGATGACTTGCCGACTCCTGGTGTTGGGGGAATTGCAGCTTTGTTGAGCCTTGAGTTAGCCGGCAGGTTGTCCTTGGC
TACACCTAGTTCTCTTCTTCT
dot-bracket secondary structure
(.((((((.(((.((.(((((((((..((((((((.(((((......))))).......((((....))))...........))))))))..))))))))
).)))))..)))))).)....
SIMILARITIES| miRBase bdi-MIR169c: 5e-62 PMRD osa-miRf10630-akr: 3e-23 microPC miR169: 0.000000000000007 | UniProt no hits RFAM MIR169_2: 3e-23 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
