ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR171
source: PMRD, original name: bdi-miR171a
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* CTCGCGCGCCAGTGGAATTGCC mismatches: 11 bulges: 3 |
pre-miRNA
GAGGTAGGAGGCGGAGCGGAGGAAAGGCTTCCCGACCGGGGGAAGCTGGTGATTGAGCCGCGCCAATATCTCTCGCGCGCCAGTGGAATTGCCGGCTTCA
GCTGCTTTCGCCGCCGCAGC
dot-bracket secondary structure
..........((((.(((((((...(((..(((....))).((((((((..(((..(((((((...........)))))...))..)))..)))))))).
))).)))))))..))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
GAGGTAGGAGGCGGAGCGGAGGAAAGGCTTCCCGACCGGGGGAAGCTGGTGATTGAGCCGCGCCAATATCTCTCGCGCGCCAGTGGAATTGCCGGCTTCA
GCTGCTTTCGCCGCCGCAGC
dot-bracket secondary structure
..........((((.(((((((...(((..(((....))).((((((((..(((..(((((((...........)))))...))..)))..)))))))).
))).)))))))..))))...
SIMILARITIES| miRBase bdi-MIR171a: 8e-64 PMRD bdi-miR171d: 1e-37 microPC miR171: 0.0004 | UniProt no hits RFAM MIR171_1: 0.00003 |
Identical with: bdi-MIR171a from miRBase (MNEST041764) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
