ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR171
source: PMRD, original name: bdi-miR171c
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGGTGCGGTTCAATCAGA mismatches: 2 bulges: 0 |
pre-miRNA
CGCGGTATTGGTGCGGTTCAATCAGAAAGCTGGCGCTCCGGACGCAAAAGGGGTTCCTCTCTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
...((((((((..(((((((((((((.((..((.(((((..........))))).)).)).)))))))))))))..))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
CGCGGTATTGGTGCGGTTCAATCAGAAAGCTGGCGCTCCGGACGCAAAAGGGGTTCCTCTCTTTGATTGAGCCGTGCCAATATCAC
dot-bracket secondary structure
...((((((((..(((((((((((((.((..((.(((((..........))))).)).)).)))))))))))))..))))))))..
SIMILARITIES| miRBase bdi-MIR171c: 1e-43 PMRD tae-miR170a: 1e-18 microPC miR171: 2e-17 | UniProt no hits RFAM MIR171_1: 3e-16 |
Identical with: bdi-MIR171c from miRBase (MNEST041766) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
deep sequencing data evidence
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
