ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR171
source: PMRD, original name: bdi-miR171d
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TAGGAGGCGGAGCGGAGGAA mismatches: 6 bulges: 3 |
pre-miRNA
TGTCGGCGAGCGCGAGGAGGAGGGCCTCCTTGAGGTAGGAGGCGGAGCGGAGGAAAGGCTTCCCGACCGGGGGAAGCTGGTGATTGAGCCGCGCCAATAT
CTCTCGC
dot-bracket secondary structure
.....(((((..((((((((....)))))))).((((((..((((..(((......((((((((......)))))))).....)))..)))).))..)))
).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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TGTCGGCGAGCGCGAGGAGGAGGGCCTCCTTGAGGTAGGAGGCGGAGCGGAGGAAAGGCTTCCCGACCGGGGGAAGCTGGTGATTGAGCCGCGCCAATAT
CTCTCGC
dot-bracket secondary structure
.....(((((..((((((((....)))))))).((((((..((((..(((......((((((((......)))))))).....)))..)))).))..)))
).)))))
SIMILARITIES| miRBase bdi-MIR171a: 1e-37 PMRD bdi-miR171a: 1e-37 microPC miR171: 0.0003 | UniProt no hits RFAM MIR171_1: 0.00002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
