ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR172
source: PMRD, original name: bdi-miR172d
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCCTGATGATGCTGCAG miRNA* GGAGCCATCGGGTCAAACC mismatches: 7 bulges: 2 |
pre-miRNA
TGGAGCCATCGGGTCAAACCGGAATGAGGCCGGTGTGGCGGCGGGGGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGC
dot-bracket secondary structure
((.((((((((((.....(((((((...((((.(..((((((.......))))))..).)))).))))))).....)))))))..))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
TGGAGCCATCGGGTCAAACCGGAATGAGGCCGGTGTGGCGGCGGGGGCAGCTGTCGTGGTGGCAGTTTTGGAGAATCCTGATGATGCTGCAGC
dot-bracket secondary structure
((.((((((((((.....(((((((...((((.(..((((((.......))))))..).)))).))))))).....)))))))..))).))..
SIMILARITIES| miRBase bdi-MIR172d: 7e-48 PMRD hvv-miR172c: 4e-25 microPC miR172: 0.00007 | UniProt no hits RFAM mir-172: 0.00008 |
Identical with: bdi-MIR172d from miRBase (MNEST041769) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
