ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR408
source: PMRD, original name: bdi-miR408
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGCACTGCCTCTTCCCTGG miRNA* mismatches: 9 bulges: 58 |
pre-miRNA
GCTCAAGGTGAAACCAACCGCTCTGCTCTCCGGCTCCAGTGGAGCCAAACTAGCTAGCAACAGAATCCATGCACTGCCTCTTCCCTGGGGATCGATCATC
AAAAGAGGGCGAGCTTGACAAGGACGGCGGCGG
dot-bracket secondary structure
......((.....))..(((((..(((.(((((((((...))))))...(.((((.((..(((..........)))((((((((....))).........
...))))))).)))).)....))).))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
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GCTCAAGGTGAAACCAACCGCTCTGCTCTCCGGCTCCAGTGGAGCCAAACTAGCTAGCAACAGAATCCATGCACTGCCTCTTCCCTGGGGATCGATCATC
AAAAGAGGGCGAGCTTGACAAGGACGGCGGCGG
dot-bracket secondary structure
......((.....))..(((((..(((.(((((((((...))))))...(.((((.((..(((..........)))((((((((....))).........
...))))))).)))).)....))).))))))))
SIMILARITIES| miRBase aqc-MIR408: 0.000006 PMRD aqc-miR408: 0.000006 microPC miR408: 0.00003 | UniProt no hits RFAM MIR408: 0.0005 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
additional data
download this record
