ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR444
source: PMRD, original name: bdi-miR444
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGCTGCCTCAAGCTTGCTGC miRNA* GTCCGACTAGAGGCAGCAACT mismatches: 2 bulges: 2 |
pre-miRNA
CACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTCA
AGCTTGCTGC
dot-bracket secondary structure
...(((..(((((.((((((((((((.((((((((.(((.(((.(..(((((((.....))).))))..).))).))))))))))).)))))))))))).
)).))).)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
CACGCGTCCGACTAGAGGCAGCAACTCCATAACTTGCGGAAAGCTTGTTGGATGATGACCATGCCAATGATTTTACCGAAGTTATGCAGTTGCTGCCTCA
AGCTTGCTGC
dot-bracket secondary structure
...(((..(((((.((((((((((((.((((((((.(((.(((.(..(((((((.....))).))))..).))).))))))))))).)))))))))))).
)).))).)))
SIMILARITIES| miRBase bdi-MIR444: 6e-58 PMRD osa-miR444e: 1e-25 microPC miR444: 0.000000006 | UniProt no hits RFAM MIR444: 0.0000000000004 |
Identical with: bdi-MIR444 from miRBase (MNEST041805) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Unver T, Budak H, Planta. 230:659-669(2009)., "Conserved microRNAs and their targets in model grass species Brachypodium distachyon"
