ABOUT THIS RECORDspecies: Brachypodium distachyon
source: PMRD, original name: bdi-miR2501
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTAATTGTGGAAGCTCTTG miRNA* TAGACTTCCATGAGTAAAAAT mismatches: 4 bulges: 1 |
pre-miRNA
TAATTTTTAATTGTGGAAGCTCTTGAAGTTTCGCATGCAGTTCCTCTATATTCCTGTCTGTCAAGTTGAGATCTCAACCCTGCCTCATTTGACTCATCTC
AGTTCACTGCATGTGGAACTTCCTAGACTTCCATGAGTAAAAATCC
dot-bracket secondary structure
..(((((((.(..((((((.(((.(((((((((((((((((............(((...(((((((.(((.............))))))))))......)
))...)))))))))))))))))..)))))))))..).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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deep sequencing data evidence
TAATTTTTAATTGTGGAAGCTCTTGAAGTTTCGCATGCAGTTCCTCTATATTCCTGTCTGTCAAGTTGAGATCTCAACCCTGCCTCATTTGACTCATCTC
AGTTCACTGCATGTGGAACTTCCTAGACTTCCATGAGTAAAAATCC
dot-bracket secondary structure
..(((((((.(..((((((.(((.(((((((((((((((((............(((...(((((((.(((.............))))))))))......)
))...)))))))))))))))))..)))))))))..).)))))))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
