ABOUT THIS RECORDspecies: Brachypodium distachyon
source: PMRD, original name: bdi-miR2502
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGTCACTTAATTCGGGACGGA miRNA* CGTCTCAAAATAACTGACGTG mismatches: 3 bulges: 0 |
pre-miRNA
CATGTACTCCCTCCGTCTCAAAATAACTGACGTGGATTTGTATAAGTTCTTATACAAATTCACGTCACTTAATTCGGGACGGAGGGTGTATGTG
dot-bracket secondary structure
(((((((.(((((((((((.((.(((.((((((((((((((((((....)))))))))))))))))).))).)).))))))))))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CATGTACTCCCTCCGTCTCAAAATAACTGACGTGGATTTGTATAAGTTCTTATACAAATTCACGTCACTTAATTCGGGACGGAGGGTGTATGTG
dot-bracket secondary structure
(((((((.(((((((((((.((.(((.((((((((((((((((((....)))))))))))))))))).))).)).))))))))))).)))))))
SIMILARITIES| miRBase no hits PMRD bdi-miR2503: 0.000000000001 microPC miR1439: 0.0000003 | UniProt no hits RFAM MIR1122: 0.000000001 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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