ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR2504
source: PMRD, original name: bdi-miR2504b
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACCAAGTTTATAGAAAAA miRNA* TTTCTAAAAACTTGGTCAGAC mismatches: 1 bulges: 0 |
pre-miRNA
AAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATCTTGTAGATTTTTCTAAAAA
CTTGGTCAGACTTGAAGAAGTTTGACTT
dot-bracket secondary structure
((((((((((((((((.((((((((((((((.(((((((((((((.((((((((......((....))......)))).))))))))))))))))).)))
))))))))))).))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGTCAAACTTCTTCATGTTTGACCAAGTTTATAGAAAAATCTACTAAGAATATCAAATGAGCGTGCTATGAAAATATATCTTGTAGATTTTTCTAAAAA
CTTGGTCAGACTTGAAGAAGTTTGACTT
dot-bracket secondary structure
((((((((((((((((.((((((((((((((.(((((((((((((.((((((((......((....))......)))).))))))))))))))))).)))
))))))))))).))))))))))))))))
SIMILARITIES| miRBase osa-MIR437: 0.00000003 PMRD zma-miR437c: 0.000000002 microPC miR437: 0.0001 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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