ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169_1
source: PMRD, original name: bna-miR169k
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTGC miRNA* AGGCAGTCTCCTCGGCTATT mismatches: 1 bulges: 2 |
pre-miRNA
AAACGGTGACATGAAGAATGAGAAGTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTCTTAACACCATATCACAGACTTTATCGATAGTCTCTGAGTTGG
TTAGGCTGTAGGCAGTCTCCTCGGCTATTCAGACACTCCTCTTTCTCCTCATTTC
dot-bracket secondary structure
....(....).(((((((.(((.(((.((.((((((((.((((.((((.((((((((((....((((..(((.(((((........))))).)))..)))
).)))).)))))))))))))).))))).))).))))).))).))))..)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
AAACGGTGACATGAAGAATGAGAAGTTGTGTGGTAGCCAAGGATGACTTGCCTGCGTCTTAACACCATATCACAGACTTTATCGATAGTCTCTGAGTTGG
TTAGGCTGTAGGCAGTCTCCTCGGCTATTCAGACACTCCTCTTTCTCCTCATTTC
dot-bracket secondary structure
....(....).(((((((.(((.(((.((.((((((((.((((.((((.((((((((((....((((..(((.(((((........))))).)))..)))
).)))).)))))))))))))).))))).))).))))).))).))))..)))....
SIMILARITIES| miRBase bna-MIR169k: 1e-84 PMRD bna-miR169g: 1e-75 microPC miR169: 0.0001 | UniProt no hits RFAM MIR169_5: 3e-70 |
Identical with: bna-MIR169k from miRBase (MNEST040282) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
