ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR169_2
source: PMRD, original name: bna-miR169m
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAAGATGACTTGCCG miRNA* GCAAGTCGACTTTGGCTCTGT mismatches: 2 bulges: 0 |
pre-miRNA
TATATGTATCAGAGAGTCATGCATGGGAAAATAGAGAATGATAATGAGCCAAAGATGACTTGCCGATTTTACCAAAGAATTTAAAACTGATAATGGTGAC
TGGCAAGTCGACTTTGGCTCTGTTTCCTTCTCTTCTTTTCGATGTAAGACTCTAGATATCTAT
dot-bracket secondary structure
.(((.(((((..((((((.(((((.(((((..((((((.((....(((((((((.((((((((((...((((((...................)))))).
)))))))))).)))))))))....)).))))))..))))).))))).)))))).))))).)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
TATATGTATCAGAGAGTCATGCATGGGAAAATAGAGAATGATAATGAGCCAAAGATGACTTGCCGATTTTACCAAAGAATTTAAAACTGATAATGGTGAC
TGGCAAGTCGACTTTGGCTCTGTTTCCTTCTCTTCTTTTCGATGTAAGACTCTAGATATCTAT
dot-bracket secondary structure
.(((.(((((..((((((.(((((.(((((..((((((.((....(((((((((.((((((((((...((((((...................)))))).
)))))))))).)))))))))....)).))))))..))))).))))).)))))).))))).)))
SIMILARITIES| miRBase bna-MIR169m: 2e-89 PMRD ath-miR169e: 1e-29 microPC no hits | UniProt no hits RFAM MIR169_2: 0.000000003 |
Identical with: bna-MIR169m from miRBase (MNEST040284) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
