ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171
source: PMRD, original name: bna-miR171b
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 4 bulges: 0 |
pre-miRNA
GGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGCGTCAAC
C
dot-bracket secondary structure
(((.(((((.((((((.(..((((((((((.((((((((...((((........)))).)))..))))).))))))))))..).)))))).)))))..))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGCGTCAAC
C
dot-bracket secondary structure
(((.(((((.((((((.(..((((((((((.((((((((...((((........)))).)))..))))).))))))))))..).)))))).)))))..))
)
SIMILARITIES| miRBase bra-MIR171d: 1e-52 PMRD bra-miR171d: 1e-52 microPC miR171: 0.0000003 | UniProt no hits RFAM MIR171_1: 7e-24 |
Identical with: bra-miR171d from PMRD (MNEST048406) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
