ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR171
source: PMRD, original name: bna-miR171f
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATCTTCCAGATTACACACGTACTATATACATTCTCTCAGTTATCTGATTGAGCCGCGCCAA
TATCTCAGTGCTCTCTCGT
dot-bracket secondary structure
((((.((((..((....(((((((((.(((((((.((((((((...(((.....................)))...))..)))))).))))))).)))))
))))..))..)))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
ACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATCTTCCAGATTACACACGTACTATATACATTCTCTCAGTTATCTGATTGAGCCGCGCCAA
TATCTCAGTGCTCTCTCGT
dot-bracket secondary structure
((((.((((..((....(((((((((.(((((((.((((((((...(((.....................)))...))..)))))).))))))).)))))
))))..))..)))).))))
SIMILARITIES| miRBase bra-MIR171e: 3e-63 PMRD bra-miR171e: 3e-63 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 5e-56 |
Identical with: bra-miR171e from PMRD (MNEST048407) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
