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ABOUT THIS RECORD

ID: MNEST048370
species: Brassica napus
miRNA family: MIR390
source: PMRD, original name: bna-miR390a

Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AAGCTCAGGAGGGATAGCGCC

miRNA*
CGCTATCCATCCTGAGTTCTA

mismatches: 2
bulges: 0

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pre-miRNA
ATTTCAGGTGATGTAGTTGAGAAGTAGCTGTAAAGCTCAGGAGGGATAGCGCCATGTCTCACCGGTACTATAAAATGTTTGTATATCTATATTGGCGCTA
TCCATCCTGAGTTCTA
TGGCTTCTTCTTGCTTTTATCCTGAGAT


dot-bracket secondary structure
(((((((((((...(((.((((((.(((((((.(((((((((.(((((((((((..........((((............))))........))))))))
))).))))))))).))
))))).))))))))).))).))))))))



SIMILARITIES
miRBase bna-MIR390a: 4e-78

PMRD bna-miR390c: 1e-25

microPC miR390: 0.000002
UniProt no hits

RFAM MIR390: 2e-18

Identical with: bna-MIR390a from miRBase (MNEST040292)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"




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