ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR390
source: PMRD, original name: bna-miR390b
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTGTCCATCCTGAGTTTCA mismatches: 1 bulges: 0 |
pre-miRNA
GTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATCATGATCACACACATCGATATTTTTGGCGCTGTCCATCCTGAGTTTCATTGGCTCTTCTT
ACTAC
dot-bracket secondary structure
((((((((((..(.((.((((((((((.(((((((((((.....(((.........))).....))))))))))).)))))))))).)).)..)))))).
.))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GTAGAGAAGAATCTGTAAAGCTCAGGAGGGATAGCGCCATCATGATCACACACATCGATATTTTTGGCGCTGTCCATCCTGAGTTTCATTGGCTCTTCTT
ACTAC
dot-bracket secondary structure
((((((((((..(.((.((((((((((.(((((((((((.....(((.........))).....))))))))))).)))))))))).)).)..)))))).
.))))
SIMILARITIES| miRBase bna-MIR390b: 6e-55 PMRD ath-miRf10112-akr: 1e-31 microPC miR390: 0.000005 | UniProt no hits RFAM MIR390: 6e-49 |
Identical with: bna-MIR390b from miRBase (MNEST040293) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
