ABOUT THIS RECORDspecies: Brassica napus
miRNA family: MIR390
source: PMRD, original name: bna-miR390c
Taxonomy by NCBI:
Brassica napus Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGCTCAGGAGGGATAGCGCC miRNA* CGCTATCCATCCTGAGTTCCA mismatches: 2 bulges: 0 |
pre-miRNA
GCGTAGTAGAGAAGTAGCTGTAAAGCTCAGGAGGGATAGCGCCATGACTCATCACCATTACTATATGTCTTTGTATATGTAATGGCGCTATCCATCCTGA
GTTCCATGGCTTCTTCTTGCTTTTATGT
dot-bracket secondary structure
((((((..((((((.((((((..(((((((((.((((((((((.(((....)))..((((((((((......))))).))))))))))))))).))))))
)))..)))))).))))))....))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
GCGTAGTAGAGAAGTAGCTGTAAAGCTCAGGAGGGATAGCGCCATGACTCATCACCATTACTATATGTCTTTGTATATGTAATGGCGCTATCCATCCTGA
GTTCCATGGCTTCTTCTTGCTTTTATGT
dot-bracket secondary structure
((((((..((((((.((((((..(((((((((.((((((((((.(((....)))..((((((((((......))))).))))))))))))))).))))))
)))..)))))).))))))....))))))
SIMILARITIES| miRBase bna-MIR390c: 1e-68 PMRD bna-miR390a: 1e-25 microPC miR390: 0.000002 | UniProt no hits RFAM MIR390: 1e-56 |
Identical with: bna-MIR390c from miRBase (MNEST040294) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL, FEBS Lett. 581:3848-3856(2007)., "Cloning and characterization of microRNAs from Brassica napus"
