ABOUT THIS RECORDspecies: Brassica oleracea
source: PMRD, original name: bol-miR158
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCCAAATGTAGACAAAGCA miRNA* CTTTGTCTATATTCTTGGAAA mismatches: 3 bulges: 1 |
pre-miRNA
ACGTCTTCTCGGTATTTCTTTGTCTATATTCTTGGAAAAAGCGATGAGGTCTCGTTGCACTTTCCCAAATGTAGACAAAGCAAAACCGTGATGACGT
dot-bracket secondary structure
(((((.((.((((.((.(((((((((((((...(((((..(((((((....)))))))..)))))..))))))))))))).)).)))).)).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
ACGTCTTCTCGGTATTTCTTTGTCTATATTCTTGGAAAAAGCGATGAGGTCTCGTTGCACTTTCCCAAATGTAGACAAAGCAAAACCGTGATGACGT
dot-bracket secondary structure
(((((.((.((((.((.(((((((((((((...(((((..(((((((....)))))))..)))))..))))))))))))).)).)))).)).)))))
SIMILARITIES| miRBase aly-MIR158a: 0.0000000000003 PMRD bra-miR158: 0.00000000000008 microPC no hits | UniProt no hits RFAM MIR158: 0.0000000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
