ABOUT THIS RECORDspecies: Brassica oleracea
source: PMRD, original name: bol-miR391
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCGCAGGAGAGATAGCGCCA miRNA* ACGGTATCTCTCCTACGTAGC mismatches: 4 bulges: 0 |
pre-miRNA
AAGGTTCGCTTCGCAGGAGAGATAGCGCCATCACTTCTTCTTAAGAGTTTAGAAGATGGTGACGGTATCTCTCCTACGTAGCAATCCTT
dot-bracket secondary structure
((((...(((.((.((((((((((.((.((((((((((.((....))...))))).))))).)).)))))))))).)).)))...))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AAGGTTCGCTTCGCAGGAGAGATAGCGCCATCACTTCTTCTTAAGAGTTTAGAAGATGGTGACGGTATCTCTCCTACGTAGCAATCCTT
dot-bracket secondary structure
((((...(((.((.((((((((((.((.((((((((((.((....))...))))).))))).)).)))))))))).)).)))...))))
SIMILARITIES| miRBase ath-MIR391: 8e-20 PMRD ath-miRf10313-akr: 8e-20 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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