ABOUT THIS RECORDspecies: Brassica oleracea
miRNA family: MIR398
source: PMRD, original name: bol-miR398a
Taxonomy by NCBI:
Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCTT miRNA* GGAGTGTCATGAGAACACGGA mismatches: 3 bulges: 0 |
pre-miRNA
TCTCAAAGGAGTGTCATGAGAACACGGATCCTCTTGTTTCTTTAAGATTTCCACTGAAACCATTGAGTATTGTGTTCTCAGGTCACCCCTTTGAA
dot-bracket secondary structure
..(((((((.(((.(.(((((((((((...(((..(((((...............)))))....)))..))))))))))).).))).))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
TCTCAAAGGAGTGTCATGAGAACACGGATCCTCTTGTTTCTTTAAGATTTCCACTGAAACCATTGAGTATTGTGTTCTCAGGTCACCCCTTTGAA
dot-bracket secondary structure
..(((((((.(((.(.(((((((((((...(((..(((((...............)))))....)))..))))))))))).).))).))))))).
SIMILARITIES| miRBase bol-MIR398a: 5e-49 PMRD bol-miR398a: 5e-49 microPC miR398: 0.00002 | UniProt no hits RFAM MIR398: 2e-20 |
Identical with: bol-MIR398a from miRBase (MNEST040308) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
