ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR167
source: PMRD, original name: bra-miR167a
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTTCGTAGTTTCACC mismatches: 1 bulges: 0 |
pre-miRNA
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACCCGTTGACTGTCGCATC
dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).).).)).)))..)))))
SIMILARITIES| miRBase bra-MIR167a: 4e-72 PMRD bna-miR167c: 4e-72 microPC miR167: 3e-51 | UniProt no hits RFAM MIR167_1: 6e-65 |
Identical with: miR167 from microPC (MNEST045889) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
