miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST048399
species: Brassica rapa
miRNA family: MIR167
source: PMRD, original name: bra-miR167a

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GATCATGTTCGTAGTTTCACC

mismatches: 1
bulges: 0

View larger
pre-miRNA
GGTGCACCGGCATCTGATGAAGCTGCCAGCATGATCTAGTTAACTTTATTTCTCCGTTGTTTATCCATGACAATGGAAAAGGGATAAGTGTCGATTAGAT
CATGTTCGTAGTTTCACC
CGTTGACTGTCGCATC


dot-bracket secondary structure
(((((..(((((.(.(.(((((((((.(((((((((((((..(((((((..((((((((((.......)))))))))...)..))))).))..)))))))
)))))).))))))))).)
.).)).)))..)))))



SIMILARITIES
miRBase bra-MIR167a: 4e-72

PMRD bna-miR167c: 4e-72

microPC miR167: 3e-51
UniProt no hits

RFAM MIR167_1: 6e-65

Identical with: miR167 from microPC (MNEST045889)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"




Liczniki na strone;