ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: PMRD, original name: bra-miR171d
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTAGTGCGGTTCAATC mismatches: 4 bulges: 0 |
pre-miRNA
GGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGCGTCAAC
C
dot-bracket secondary structure
(((.(((((.((((((.(..((((((((((.((((((((...((((........)))).)))..))))).))))))))))..).)))))).)))))..))
)
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
GGTAACGCGAGATATTAGTGCGGTTCAATCAAATAGTCGTGTTCTCACTTGATAGAGATCGGTTTTGTTCGATTGAGCCGTGCCAATATCACGCGTCAAC
C
dot-bracket secondary structure
(((.(((((.((((((.(..((((((((((.((((((((...((((........)))).)))..))))).))))))))))..).)))))).)))))..))
)
SIMILARITIES| miRBase bra-MIR171d: 1e-52 PMRD bna-miR171b: 1e-52 microPC miR171: 0.0000003 | UniProt no hits RFAM MIR171_1: 7e-24 |
Identical with: bna-miR171b from PMRD (MNEST048364) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
