ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR171
source: PMRD, original name: bra-miR171e
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGCGCCAATATC miRNA* TATTGGCCTGGTTCACTCAGA mismatches: 2 bulges: 0 |
pre-miRNA
ACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATCTTCCAGATTACACACGTACTATATACATTCTCTCAGTTATCTGATTGAGCCGCGCCAA
TATCTCAGTGCTCTCTCGT
dot-bracket secondary structure
((((.((((..((....(((((((((.(((((((.((((((((...(((.....................)))...))..)))))).))))))).)))))
))))..))..)))).))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
ACGAAAGAGTCCTCTTTGATATTGGCCTGGTTCACTCAGATCTTCCAGATTACACACGTACTATATACATTCTCTCAGTTATCTGATTGAGCCGCGCCAA
TATCTCAGTGCTCTCTCGT
dot-bracket secondary structure
((((.((((..((....(((((((((.(((((((.((((((((...(((.....................)))...))..)))))).))))))).)))))
))))..))..)))).))))
SIMILARITIES| miRBase bra-MIR171e: 3e-63 PMRD bna-miR171f: 3e-63 microPC miR171: 0.0000004 | UniProt no hits RFAM MIR171_1: 5e-56 |
Identical with: bna-miR171f from PMRD (MNEST048368) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
