ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR172
source: PMRD, original name: bra-miR172a
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GCAGCACCATCAAGATTCACA mismatches: 4 bulges: 0 |
pre-miRNA
CGTTTTTTGTAGGCGCAGCACCATCAAGATTCACATGGAAATTGAAAAATCTCCTAATTTTTAATTAGGGTTTTGATATGTATATGAGAATCTTGATGAT
GCTGCATCAACAACCGACG
dot-bracket secondary structure
((((..((((.(..((((((.(((((((((((.((((...((...(((((..((((((.....)))))))))))...))...)))).))))))))))).)
)))))..).))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CGTTTTTTGTAGGCGCAGCACCATCAAGATTCACATGGAAATTGAAAAATCTCCTAATTTTTAATTAGGGTTTTGATATGTATATGAGAATCTTGATGAT
GCTGCATCAACAACCGACG
dot-bracket secondary structure
((((..((((.(..((((((.(((((((((((.((((...((...(((((..((((((.....)))))))))))...))...)))).))))))))))).)
)))))..).))))..))))
SIMILARITIES| miRBase bra-MIR172a: 3e-63 PMRD bol-miR172a: 3e-63 microPC miR172: 0.0000004 | UniProt no hits RFAM mir-172: 1e-59 |
Identical with: bol-MIR172a from miRBase (MNEST040306) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
