ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR172
source: PMRD, original name: bra-miR172b
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GCAGCACCATTAAGATTCACA mismatches: 2 bulges: 0 |
pre-miRNA
TGTAGGTGCAGCACCATTAAGATTCACATGGAAATTGAGAAAACCCTAATTTATATTAATTAGGGTTCTGATATGTATATGAGAATCTTGATGATGCTGC
ATCAACA
dot-bracket secondary structure
.((.(((((((((.(((((((((((.((((.....(.(((..(((((((((......)))))))))))).)......)))).))))))))))).))))))
))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
TGTAGGTGCAGCACCATTAAGATTCACATGGAAATTGAGAAAACCCTAATTTATATTAATTAGGGTTCTGATATGTATATGAGAATCTTGATGATGCTGC
ATCAACA
dot-bracket secondary structure
.((.(((((((((.(((((((((((.((((.....(.(((..(((((((((......)))))))))))).)......)))).))))))))))).))))))
))).)).
SIMILARITIES| miRBase bra-MIR172b: 4e-56 PMRD bra-miR172b: 4e-56 microPC miR172: 0.0000003 | UniProt no hits RFAM mir-172: 2e-30 |
Identical with: bol-MIR172b from miRBase (MNEST040307) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
