ABOUT THIS RECORDspecies: Brassica rapa
miRNA family: MIR1885
source: PMRD, original name: bra-miR1885
Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATGAAAGGTATGATTCC miRNA* AATCATACTTTCATTGATAAT mismatches: 1 bulges: 1 |
pre-miRNA
CATCCTGTCTTCACGAGCTTCCTCTAGAAGATGTGCGCAGAGTCTTTCTAAGTCACACTCATAAAAAATTCAAAGAAAAGGAATCATACTTTCATTGATA
ATGAAATCAATAGAGAGAATGATACTGAGCTCTTACATTCGATTAGATGCGATAATCTTATCCTCTAATTGCTTGTAAGAGCTGATGACCAATGGATCAT
CCTCTATTGATCTCTTCATCAATGAAAGGTATGATTCCCTTTCTTTGAAATCACTTTTGAATGTGACTAAGAAAGCCTCTACGTACATCTTCTCCGCGGA
AGCTCATGAAAACAAGGTAG
dot-bracket secondary structure
...(((((.((((.((((((((.(.((((((((((((.((((.((((((.(((((((.(((.......((((((((((.((((((((((((((((((((.
..((.((((((((((............((((((((((..((((((((.(.((((....)))))))))))))..))))))))))(((((((...)).))))
))))))))))).))...)))))))))).)))))))))).))))))))))........))).))))))).)))))).)))).))))))))))))..).)))
))))).)))).)).)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
CATCCTGTCTTCACGAGCTTCCTCTAGAAGATGTGCGCAGAGTCTTTCTAAGTCACACTCATAAAAAATTCAAAGAAAAGGAATCATACTTTCATTGATA
ATGAAATCAATAGAGAGAATGATACTGAGCTCTTACATTCGATTAGATGCGATAATCTTATCCTCTAATTGCTTGTAAGAGCTGATGACCAATGGATCAT
CCTCTATTGATCTCTTCATCAATGAAAGGTATGATTCCCTTTCTTTGAAATCACTTTTGAATGTGACTAAGAAAGCCTCTACGTACATCTTCTCCGCGGA
AGCTCATGAAAACAAGGTAG
dot-bracket secondary structure
...(((((.((((.((((((((.(.((((((((((((.((((.((((((.(((((((.(((.......((((((((((.((((((((((((((((((((.
..((.((((((((((............((((((((((..((((((((.(.((((....)))))))))))))..))))))))))(((((((...)).))))
))))))))))).))...)))))))))).)))))))))).))))))))))........))).))))))).)))))).)))).))))))))))))..).)))
))))).)))).)).)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|O82500|Y4117_ARATH: 0.0000000008 RFAM no hits |
Identical with: bra-MIR1885 from miRBase (MNEST040326) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"
