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ABOUT THIS RECORD

ID: MNEST048416
species: Capsicum annuum
source: PMRD, original name: can-miR156a

Taxonomy by NCBI:
Capsicum annuum Capsicum Capsiceae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGAGAGCAC

miRNA*
 CACCTTGATGGGAAACCTCGGCTGTGGTGCCCTTGGAGGGCAAGAACAAGCTAGATGCATTACT

mismatches: 9
bulges: 72
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pre-miRNA
 TGACAGAAGAGAGAGAGCACGAGGAAATTCCGGTCCTATAACCATATTGAACGTGGATTCCTTGGCACCTTGATGGGAAACCTCGGCTGTGGTGCCCTTG
GAGGGCAAGAACAAGCTAGATGCATTACTCTGTGCACCCACACCCCCTGAAA

dot-bracket secondary structure
...(((....(((.(.((.(((((((..((((((.(.(((....))).).)).))))))))))))).))))...((....))..((.((((((((((...
..))))).............(((((......))))).))))).)).)))...


SIMILARITIES
miRBase zma-MIR156j: 0.0005

PMRD can-miR157: 8e-83

microPC miR157: 0.0005		UniProt no hits

RFAM no hits

Identical with: can-miR157 from PMRD (MNEST048418)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
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