ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR167
source: PMRD, original name: cle-miR167
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCTGGCAGTTTCACC mismatches: 0 bulges: 1 |
pre-miRNA
TAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGT
dot-bracket secondary structure
...((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TAGTAGTAGTTGAAGCTGCCAGCATGATCTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGT
dot-bracket secondary structure
...((((((.((((((((((((.((((((((..((((((((((........)).))))))))..)))))))))))))))))))).)))))).....
SIMILARITIES| miRBase ctr-MIR167: 1e-49 PMRD ptc-miR167e: 0.000000000000005 microPC miR167: 2e-36 | UniProt no hits RFAM MIR167_1: 0.00000000000009 |
Identical with: ccl-MIR167a from miRBase (MNEST041208) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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