ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR162
source: PMRD, original name: cpa-miR162a
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGAGGCAGCGGTTCATCGATC mismatches: 3 bulges: 0 |
pre-miRNA
AGGGTAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAATTTGGTGTGAAAAATCACAGAACATGAATCGATCGATAAACCTCTGCATCCAG
CGTTACCCC
dot-bracket secondary structure
.((((((...(.(((((.((((.((((.(((((((..(((....))).....(((((....)))))...........))))))).)))).)))).)))))
.))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Porter BW, Aizawa KS, Zhu YJ, Christopher DA, Plant Sci. 174(1):38-50(2008), "Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey"
AGGGTAAAGTCACTGGAGGCAGCGGTTCATCGATCTCTTCCTGGGAATTTGGTGTGAAAAATCACAGAACATGAATCGATCGATAAACCTCTGCATCCAG
CGTTACCCC
dot-bracket secondary structure
.((((((...(.(((((.((((.((((.(((((((..(((....))).....(((((....)))))...........))))))).)))).)))).)))))
.))))))).
SIMILARITIES| miRBase cpa-MIR162a: 3e-57 PMRD ghr-miR162a: 1e-25 microPC miR162: 3e-20 | UniProt no hits RFAM MIR162_2: 2e-45 |
Identical with: cpa-MIR162a from miRBase (MNEST040329) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Porter BW, Aizawa KS, Zhu YJ, Christopher DA, Plant Sci. 174(1):38-50(2008), "Differentially expressed and new non-protein-coding genes from a Carica papaya root transcriptome survey"
