ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR911
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACAATGGTAGTACGGCCATTT miRNA* ATGGCCGTACTACTATTGTCA mismatches: 0 bulges: 0 |
pre-miRNA
AAATGGCCGTACTACTATTGTCATGTCTGACTGCATCATGTGTCATGATGCAGTCAGACATGACAATGGTAGTACGGCCATTT
dot-bracket secondary structure
((((((((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y, Genes Dev. 21:1190-1203(2007)., "A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii"
AAATGGCCGTACTACTATTGTCATGTCTGACTGCATCATGTGTCATGATGCAGTCAGACATGACAATGGTAGTACGGCCATTT
dot-bracket secondary structure
((((((((((((((((((((((((((((((((((((((((...))))))))))))))))))))))))))))))))))))))))
SIMILARITIES| miRBase cre-MIR911: 6e-42 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR911 from miRBase (MNEST039312) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Zhao T, Li G, Mi S, Li S, Hannon GJ, Wang XJ, Qi Y, Genes Dev. 21:1190-1203(2007)., "A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii"
