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ABOUT THIS RECORD
ID:
MNEST048445
species:
Chlamydomonas reinhardtii
source:
PMRD, original name:
cre-miR1143
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTATTTGCCCGAAGGGGACGTCCT
miRNA*
GACGTCCCCTTACGGGAATATAAAT
mismatches:
3
bulges:
1
View larger
pre-miRNA
AG
GACGTCCCCTTACGGGAATATAAAT
ATTAGTGGCAGTGGTACCGCCACTGCCTATATTTATATACTCCGAAGGAACTTGTTAGCCGATAGGCGAGGCA
ACAAATTTATTTATTGTATATAAATATCCACTAAAAT
TTATTTGCCCGAAGGGGACGTCCT
dot-bracket secondary structure
((
(((((((((((.((((...((((((
.(((((((((((((.....)))))))).((((((((((((...(((.(((.(((((.(((.........))))
)))).))).)))...))))))))))))..))))).))
))))...)))))))))))))))))
SIMILARITIES
miRBase
cre-MIR1143
:
4e-88
PMRD
cre-miR1143
:
4e-88
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
cre-MIR1143
from miRBase (
MNEST039323
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC,
Nature. 447:1126-1129(2007).
,
"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"