ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1143
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTATTTGCCCGAAGGGGACGTCCT miRNA* GACGTCCCCTTACGGGAATATAAAT mismatches: 3 bulges: 1 |
pre-miRNA
AGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACCGCCACTGCCTATATTTATATACTCCGAAGGAACTTGTTAGCCGATAGGCGAGGCA
ACAAATTTATTTATTGTATATAAATATCCACTAAAATTTATTTGCCCGAAGGGGACGTCCT
dot-bracket secondary structure
(((((((((((((.((((...((((((.(((((((((((((.....)))))))).((((((((((((...(((.(((.(((((.(((.........))))
)))).))).)))...))))))))))))..))))).))))))...)))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
AGGACGTCCCCTTACGGGAATATAAATATTAGTGGCAGTGGTACCGCCACTGCCTATATTTATATACTCCGAAGGAACTTGTTAGCCGATAGGCGAGGCA
ACAAATTTATTTATTGTATATAAATATCCACTAAAATTTATTTGCCCGAAGGGGACGTCCT
dot-bracket secondary structure
(((((((((((((.((((...((((((.(((((((((((((.....)))))))).((((((((((((...(((.(((.(((((.(((.........))))
)))).))).)))...))))))))))))..))))).))))))...)))))))))))))))))
SIMILARITIES| miRBase cre-MIR1143: 4e-88 PMRD cre-miR1143: 4e-88 microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1143 from miRBase (MNEST039323) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
