ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1144
source: PMRD, original name: cre-miR1144b
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGTAGTGTGGCGGCAGGCAG miRNA* GCCCGCAGCACAATCACCAACC mismatches: 5 bulges: 2 |
pre-miRNA
GTGCAGCAGGCTTGGTACCGGGCACGCCGGAGGTGGGTAGTGTGGCGGCAGGCAGCAGGCCTCGCGGGGCTGCTGGTGGTGGTGGAGCAGGACGACCGGC
GCCCGTCCTCCTCCTCCTCCAACAGCGGCCCCGCGCTGCCAGCTGCCCGCAGCACAATCACCAACCCCCAGCGTACCCGGCTAAACACCGTGGGCCCACA
GCAC
dot-bracket secondary structure
((((.(..((((((((.(((((.((((.((.(((.(((..((((.(.((.((((((.(((..(((((((((((((.(((.((.((((.((((((......
...)))))).)))).)).))).)))))))))))))..))).)))))).)).)))))...))).))).)).)))).)))))......))))..))))..).
))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
GTGCAGCAGGCTTGGTACCGGGCACGCCGGAGGTGGGTAGTGTGGCGGCAGGCAGCAGGCCTCGCGGGGCTGCTGGTGGTGGTGGAGCAGGACGACCGGC
GCCCGTCCTCCTCCTCCTCCAACAGCGGCCCCGCGCTGCCAGCTGCCCGCAGCACAATCACCAACCCCCAGCGTACCCGGCTAAACACCGTGGGCCCACA
GCAC
dot-bracket secondary structure
((((.(..((((((((.(((((.((((.((.(((.(((..((((.(.((.((((((.(((..(((((((((((((.(((.((.((((.((((((......
...)))))).)))).)).))).)))))))))))))..))).)))))).)).)))))...))).))).)).)))).)))))......))))..))))..).
))))
SIMILARITIES| miRBase cre-MIR1144b: 1e-113 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1144b from miRBase (MNEST039326) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
