ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1146
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGGGTCCGATCGGGAAGCT miRNA* CTTCCCACATGGGGCCCA mismatches: 3 bulges: 1 |
pre-miRNA
ATGGGTCCGATCGGGAAGCTTTATCACACTCGGCGTATGAACAACAAGCTTCCCACATGGGGCCCA
dot-bracket secondary structure
.(((((((.((.(((((((((..(((.((.....)).))).....)))))))))..)).)))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
ATGGGTCCGATCGGGAAGCTTTATCACACTCGGCGTATGAACAACAAGCTTCCCACATGGGGCCCA
dot-bracket secondary structure
.(((((((.((.(((((((((..(((.((.....)).))).....)))))))))..)).)))))))
SIMILARITIES| miRBase cre-MIR1146: 6e-32 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1146 from miRBase (MNEST039329) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
