ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1151
source: PMRD, original name: cre-miR1151a
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGGGCTCATAACCTGTTG miRNA* ACGGGGTGTGGGACCCGGACT mismatches: 2 bulges: 0 |
pre-miRNA
CCGGCCGCGGCAGTCCGGGGCTCATAACCTGTTGACGCGCGCAGCCCGCGGGCAGTCCCTGCGGGCCGCGCGGCGCTAACGGGGTGTGGGACCCGGACTG
ACGCGGCCGG
dot-bracket secondary structure
(((((((((.(((((((((.((((((.(((((((.(((((((.(((((((((.....))))))))).)))).))).))))))).)))))).)))))))))
.)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
CCGGCCGCGGCAGTCCGGGGCTCATAACCTGTTGACGCGCGCAGCCCGCGGGCAGTCCCTGCGGGCCGCGCGGCGCTAACGGGGTGTGGGACCCGGACTG
ACGCGGCCGG
dot-bracket secondary structure
(((((((((.(((((((((.((((((.(((((((.(((((((.(((((((((.....))))))))).)))).))).))))))).)))))).)))))))))
.)))))))))
SIMILARITIES| miRBase cre-MIR1151a: 6e-58 PMRD cre-miR1151a: 6e-58 microPC no hits | UniProt no hits RFAM MIR1151: 1e-56 |
Identical with: cre-MIR1151a from miRBase (MNEST039339) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
