ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
miRNA family: MIR1151
source: PMRD, original name: cre-miR1151b
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGGGCTCATAACCTGTTA miRNA* ACGGGTTGTGGGACCCGGACT mismatches: 1 bulges: 0 |
pre-miRNA
GTGGTGTGTGCCGCTCACCGGCCACGGCAGTCCGGGGCTCATAACCTGTTAACGCGCGCAGCCCGCAGGCAGTCCCTGCGGGCCGCGCGGTGCTAACGGG
TTGTGGGACCCGGACTGACGCGGCTGGCATGTGACAGGCCCCAC
dot-bracket secondary structure
((((.((.((.(((...((((((.((.(((((((((.((((((((((((((.(((((((.(((((((((.....))))))))).)))).))).)))))))
))))))).))))))))).)).))))))...))).)).)).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
GTGGTGTGTGCCGCTCACCGGCCACGGCAGTCCGGGGCTCATAACCTGTTAACGCGCGCAGCCCGCAGGCAGTCCCTGCGGGCCGCGCGGTGCTAACGGG
TTGTGGGACCCGGACTGACGCGGCTGGCATGTGACAGGCCCCAC
dot-bracket secondary structure
((((.((.((.(((...((((((.((.(((((((((.((((((((((((((.(((((((.(((((((((.....))))))))).)))).))).)))))))
))))))).))))))))).)).))))))...))).)).)).))))
SIMILARITIES| miRBase cre-MIR1151b: 4e-78 PMRD cre-miR1151b: 4e-78 microPC no hits | UniProt no hits RFAM MIR1151: 8e-77 |
Identical with: cre-MIR1151b from miRBase (MNEST039340) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
