ABOUT THIS RECORDspecies: Chlamydomonas reinhardtii
source: PMRD, original name: cre-miR1157
Taxonomy by NCBI:
Chlamydomonas reinhardtii Chlamydomonas Chlamydomonadaceae Chlamydomonadales Chlorophyceae Chlorophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCAGGTAGCGGGACCAGGTG miRNA* CCTGGTCCCGCTATTTGAATC mismatches: 0 bulges: 0 |
pre-miRNA
TCCTGGGCGCAGTGTTCCAGCTGCAGTACACCTGGTCCCGCTATTTGAATCTCGCTGATCGGCACCATGGGGGTGGTGGTGATCAGCGCTATTCAGGTAG
CGGGACCAGGTGTACTGCAGCCGGAACACTGCCAGGA
dot-bracket secondary structure
(((((...((((((((((.(((((((((((((((((((((((((((((((..(((((((((.((((((....)))))).)))))))))..))))))))))
))))))))))))))))))))).)))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
TCCTGGGCGCAGTGTTCCAGCTGCAGTACACCTGGTCCCGCTATTTGAATCTCGCTGATCGGCACCATGGGGGTGGTGGTGATCAGCGCTATTCAGGTAG
CGGGACCAGGTGTACTGCAGCCGGAACACTGCCAGGA
dot-bracket secondary structure
(((((...((((((((((.(((((((((((((((((((((((((((((((..(((((((((.((((((....)))))).)))))))))..))))))))))
))))))))))))))))))))).)))))))))))))))
SIMILARITIES| miRBase cre-MIR1157: 6e-74 PMRD cre-miR1157: 6e-74 microPC no hits | UniProt no hits RFAM no hits |
Identical with: cre-MIR1157 from miRBase (MNEST039348) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC, Nature. 447:1126-1129(2007)., "miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"
