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ABOUT THIS RECORD
ID:
MNEST048460
species:
Chlamydomonas reinhardtii
source:
PMRD, original name:
cre-miR1162
Taxonomy by NCBI:
Chlamydomonas reinhardtii
Chlamydomonas
Chlamydomonadaceae
Chlamydomonadales
Chlorophyceae
Chlorophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGTTGTAGTAGTTTAGCCCTGC
miRNA*
CGGCCTAAATTACTACAACACG
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCGGGGCCCTGACACCACTGCGGCCGC
CGGCCTAAATTACTACAACACG
CCGCGCCTGGACCCGAGGGAGGACCCCTCGGGACCCGGTACGTCG
TGTTGT
AGTAGTTTAGCCCTGC
GGTCGCGGTGGGGTCAGGTCCTTCCGC
dot-bracket secondary structure
((((((.((((((.(((((((((((((
.((.((((((((((((((((((
.((..((.((.((((((((.....)))))))).)).))..)).))
))))))
)))))))))).)).))
))))))))))).)))))).))..))))
SIMILARITIES
miRBase
cre-MIR1162
:
2e-77
PMRD
cre-miR1162
:
2e-77
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Molnar A, Schwach F, Studholme DJ, Thuenemann EC, Baulcombe DC,
Nature. 447:1126-1129(2007).
,
"miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii"